A tool for the analysis of chromosomes: KaryoType

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dc.contributor.authorAltinordu, Fahim
dc.contributor.authorPeruzzi, Lorenzo
dc.contributor.authorYu, Yan
dc.contributor.authorHe, Xingjin
dc.date.accessioned2020-03-26T19:22:59Z
dc.date.available2020-03-26T19:22:59Z
dc.date.issued2016
dc.departmentSelçuk Üniversitesien_US
dc.description.abstractThe software KaryoType, an improved and completely renewed version of the previously existing NucType, was developed for plant chromosomes. The primary function of the software is to allow efficient chromosome measurements and karyotype analysis from microphotographs. Karyotype characterization usually includes chromosome number, size, arm ratio, centromeric index, relative lengths and karyotype formula. Moreover, KaryoType is also capable of measuring karyotype asymmetry indices such as CVCL, CVCI and M-CA, and can recognize chromosome homologues based on chromosome length and arm ratio automatically or manually. This program runs on Windows 7 and above and Mac OS X and is freely available at the website of the University of Sichuan (http://mnh.scu.edu.cn/soft/blog/karyotype/).en_US
dc.description.sponsorshipNational Natural Science Foundation of ChinaNational Natural Science Foundation of China [31500188, 31270241]en_US
dc.description.sponsorshipGiovanni Astuti and Francesco Roma-Marzio (University of Pisa) are gratefully acknowledged for having provided the five microphotographs of Picris scaberrima on which our demonstration was based. This work was supported by the National Natural Science Foundation of China (Grant Nos. 31500188, 31270241).en_US
dc.identifier.doi10.12705/653.9en_US
dc.identifier.endpage592en_US
dc.identifier.issn0040-0262en_US
dc.identifier.issn1996-8175en_US
dc.identifier.issue3en_US
dc.identifier.scopusqualityQ1en_US
dc.identifier.startpage586en_US
dc.identifier.urihttps://dx.doi.org/10.12705/653.9
dc.identifier.urihttps://hdl.handle.net/20.500.12395/33217
dc.identifier.volume65en_US
dc.identifier.wosWOS:000379280900009en_US
dc.identifier.wosqualityQ2en_US
dc.indekslendigikaynakWeb of Scienceen_US
dc.indekslendigikaynakScopusen_US
dc.language.isoenen_US
dc.publisherINT ASSOC PLANT TAXONOMY-IAPTen_US
dc.relation.ispartofTAXONen_US
dc.relation.publicationcategoryMakale - Uluslararası Hakemli Dergi - Kurum Öğretim Elemanıen_US
dc.rightsinfo:eu-repo/semantics/closedAccessen_US
dc.selcuk20240510_oaigen_US
dc.subjectbiodiversity informaticsen_US
dc.subjectcomparative cytogeneticsen_US
dc.subjectfreewareen_US
dc.subjectidiogramen_US
dc.subjectimage analysis systemen_US
dc.subjectkaryogramen_US
dc.subjectkaryotype asymmetryen_US
dc.titleA tool for the analysis of chromosomes: KaryoTypeen_US
dc.typeArticleen_US

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