A new method to forecast of Escherichia coli promoter gene sequences: Integrating feature selection and Fuzzy-AIRS classifier system
Küçük Resim Yok
Tarih
2009
Yazarlar
Dergi Başlığı
Dergi ISSN
Cilt Başlığı
Yayıncı
PERGAMON-ELSEVIER SCIENCE LTD
Erişim Hakkı
info:eu-repo/semantics/closedAccess
Özet
We have investigated the real-world task of recognizing biological concepts in DNA sequences in this work. Recognizing promoters in strings that represent nucleotides (one of A, G, T, or C) has been performed using a novel approach based on feature selection (FS) and Artificial Immune Recognition System (AIRS) with Fuzzy resource allocation mechanism (Fuzzy-AIRS), which is. first proposed by us. The aim of this study is to improve the prediction accuracy of Escherichia coli promoter gene sequences using a novel system based on FS and Fuzzy-AIRS. The E. coli promoter gene sequences dataset has 57 attributes and 106 samples including 53 promoters and 53 non-promoters. The proposed system consists of two parts. Firstly, we have reduced the dimension of E. coli promoter gene sequences dataset from 57 attributes to 4 attributes by means of FS process. Second, Fuzzy-AIRS classifier algorithm has been run to predict the E. coli promoter gene sequences. The robustness of the proposed method is examined using prediction accuracy, sensitivity and specificity analysis, k-fold cross-validation method and confusion matrix. Whilst only Fuzzy-AIRS classifier has obtained 50% prediction accuracy using 10-fold cross-validation, the proposed system has obtained 90% prediction accuracy in the same conditions. These obtained results have indicated that the proposed system obtain the success rate in recognizing promoters in strings that represent nucleotides. (C) 2007 Elsevier Ltd. All rights reserved.
Açıklama
Anahtar Kelimeler
Escherichia coli promoter gene sequences, Feature selection, Artificial immune system, AIRS classification system, Fuzzy resource allocation mechanism, 10-fold cross-validation, Prediction
Kaynak
EXPERT SYSTEMS WITH APPLICATIONS
WoS Q Değeri
Q1
Scopus Q Değeri
Q1
Cilt
36
Sayı
1
